Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga11g00007.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4788
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.35
Found at i:4261 original size:157 final size:157
Alignment explanation
Indices: 3972--4261 Score: 519
Period size: 157 Copynumber: 1.8 Consensus size: 157
3962 AAACTTCCCT
3972 TTGCCTTTGGTGGCCATATTTTCAGCACTATTGAATTTAGTCTTTTGGTCTATGTCTGGATCTTT
1 TTGCCTTTGGTGGCCATATTTTCAGCACTATTGAATTTAGTCTTTTGGTCTATGTCTGGATCTTT
* *
4037 AGGCACTAGATTTGAAGCCAAACTACGTGCATGCTTGGGCAAACACGGGTATCAGTTACGCCTAC
66 AGGCACTAGATTTGAAGCCAAACTACGTGCATGCTTGGGCAAACACGGGTATCAGTTACACCAAC
4102 CAGATCTTGCATATGCAGTTCGATTTG
131 CAGATCTTGCATATGCAGTTCGATTTG
4129 TTGCCTGTT-GTGGCCATATTTTCAGCACTATTGAATTTAGTCTTTTGGTCTATGTCTGGATCTT
1 TTGCCT-TTGGTGGCCATATTTTCAGCACTATTGAATTTAGTCTTTTGGTCTATGTCTGGATCTT
* * *
4193 TAGGCACTAGATTTGAAGCCAAACTATGTGCGTGCTTGGGCAAACATGGGTATCAGTTACACCAA
65 TAGGCACTAGATTTGAAGCCAAACTACGTGCATGCTTGGGCAAACACGGGTATCAGTTACACCAA
4258 CCAG
130 CCAG
4262 GGTATGTATG
Statistics
Matches: 127, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
157 125 0.98
158 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (157 bp):
TTGCCTTTGGTGGCCATATTTTCAGCACTATTGAATTTAGTCTTTTGGTCTATGTCTGGATCTTT
AGGCACTAGATTTGAAGCCAAACTACGTGCATGCTTGGGCAAACACGGGTATCAGTTACACCAAC
CAGATCTTGCATATGCAGTTCGATTTG
Done.