Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00007.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3179
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33


Found at i:2627 original size:66 final size:66

Alignment explanation


    Indices: 2521--2653  Score: 221
    Period size: 66  Copynumber: 2.0  Consensus size: 66

       2511 TGGAAAAAAA

                                                                     *  *    
       2521 GCACTAGATTTGAAGCCAAACTACGTGCATGCTTGGGCAAACACGGGTATCAGTTACGCCTACCA
          1 GCACTAGATTTGAAGCCAAACTACGTGCATGCTTGGGCAAACACGGGTATCAGTTACACCAACCA

             
       2586 G
         66 G

                                   *    *              *                     
       2587 GCACTAGATTTGAAGCCAAACTATGTGCGTGCTTGGGCAAACATGGGTATCAGTTACACCAACCA
          1 GCACTAGATTTGAAGCCAAACTACGTGCATGCTTGGGCAAACACGGGTATCAGTTACACCAACCA

             
       2652 G
         66 G

             
       2653 G
          1 G

       2654 GTATGTATGA


Statistics
Matches: 62,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  66   62  1.00

ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22


Consensus pattern (66 bp):   
GCACTAGATTTGAAGCCAAACTACGTGCATGCTTGGGCAAACACGGGTATCAGTTACACCAACCA
G
Done.