Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00009.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2210
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29


Found at i:1351 original size:78 final size:78

Alignment explanation


    Indices: 1222--1377  Score: 231
    Period size: 78  Copynumber: 2.0  Consensus size: 78

       1212 CTCATATTCT

                       *                      *                         *    
       1222 ACCATTAAACCGTGATCCCTTGATCTCACCAGCTGGGAGAGTCGGTGATCATGTTGATAATGATC
          1 ACCATTAAACCCTGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC

                    *    
       1287 ACCATGGAGTTTG
         66 ACCATGGACTTTG

                            **          *             *                *     
       1300 ACCATTAAACCCTGATTGCTTGATCTCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
          1 ACCATTAAACCCTGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC

                         
       1365 ACCATGGACTTTG
         66 ACCATGGACTTTG

       1378 TGTACCAGAA


Statistics
Matches: 69,  Mismatches: 9, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  78   69  1.00

ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29


Consensus pattern (78 bp):   
ACCATTAAACCCTGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCATGGACTTTG
Done.