Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00009.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2306
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:1360 original size:78 final size:78

Alignment explanation


    Indices: 1231--1386  Score: 231
    Period size: 78  Copynumber: 2.0  Consensus size: 78

       1221 CTCATATTCT

                       *                      *                         *    
       1231 ACCATTAAACCGTGATCCCTTGATCTCACCAGCTGGGAGAGTCGGTGATCATGTTGATAATGATC
          1 ACCATTAAACCCTGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC

                    *    
       1296 ACCATGGAGTTTG
         66 ACCATGGACTTTG

                            **          *             *                *     
       1309 ACCATTAAACCCTGATTGCTTGATCTCATCAGCTAGGAGAGTTGGTGATCATGTTGATAGCGATC
          1 ACCATTAAACCCTGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC

                         
       1374 ACCATGGACTTTG
         66 ACCATGGACTTTG

       1387 TGTACCAGAA


Statistics
Matches: 69,  Mismatches: 9, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  78   69  1.00

ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29


Consensus pattern (78 bp):   
ACCATTAAACCCTGATCCCTTGATCTCACCAGCTAGGAGAGTCGGTGATCATGTTGATAACGATC
ACCATGGACTTTG
Done.