Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00023.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2293
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28


Found at i:27 original size:14 final size:14

Alignment explanation


    Indices: 5--41  Score: 56
    Period size: 14  Copynumber: 2.6  Consensus size: 14

          1 CCCC

                          
          5 TTCTCTCTTTATCT
          1 TTCTCTCTTTATCT

              *       *   
         19 TTTTCTCTTTTTCT
          1 TTCTCTCTTTATCT

                     
         33 TTCTCTCTT
          1 TTCTCTCTT

         42 GCTTTCCTAT


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  14   20  1.00

ACGTcount: A:0.03, C:0.27, G:0.00, T:0.70


Consensus pattern (14 bp):   
TTCTCTCTTTATCT
Done.