Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00024.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3792
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.34


Found at i:1370 original size:30 final size:32

Alignment explanation


    Indices: 1334--1394  Score: 81
    Period size: 30  Copynumber: 1.9  Consensus size: 32

       1324 TATCCATTGC

                           *                
       1334 TTCTCTTCCATAT-AGAA-GTTAGATTTTTGT
          1 TTCTCTTCCATATGAAAAGGTTAGATTTTTGT

                   *                       
       1364 TTCTCTTTCATATGGAAAAGGTTAGATTTTT
          1 TTCTCTTCCATAT-GAAAAGGTTAGATTTTT

       1395 ACTTTTTTAT


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  30   12  0.46
  32    3  0.12
  33   11  0.42

ACGTcount: A:0.25, C:0.11, G:0.15, T:0.49


Consensus pattern (32 bp):   
TTCTCTTCCATATGAAAAGGTTAGATTTTTGT
Done.