Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00029.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3331
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:969 original size:3 final size:3

Alignment explanation


    Indices: 961--997  Score: 74
    Period size: 3  Copynumber: 12.3  Consensus size: 3

        951 AAAAGTGGGG

                                                             
        961 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
          1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T

        998 TAGCTTCAGA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68


Consensus pattern (3 bp):   
TCT

Done.