Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00084.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13125
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33


Found at i:345 original size:66 final size:65

Alignment explanation


    Indices: 239--409  Score: 207
    Period size: 66  Copynumber: 2.6  Consensus size: 65

        229 CGGACTATCC

                                *     ***      *                  *  **      
        239 TCAATATTCCGTTAGACACCGTAACGACCACTCAGCTCCGTCTTTTGCACCAACGGCTGAGTCTT
          1 TCAATATTCCGTTAG-CACCATAACGGTTACTCAGATCCGTCTTTTGCACCAACCGCACAGTCTT

             
        304 T
         65 T

                                                            *          *     
        305 TCAATATTCCGTTAGTCACCATAACGGTTACTCAGATCCGTCTTTTGCGCCAACCGCACCGTCTT
          1 TCAATATTCCGTTAG-CACCATAACGGTTACTCAGATCCGTCTTTTGCACCAACCGCACAGTCTT

             
        370 T
         65 T

             *               *                     
        371 TGAATATTCCGTTAGCGGCCATAACGGTTACTCAGATCC
          1 TCAATATTCCGTTAGC-ACCATAACGGTTACTCAGATCC

        410 TTCTCCTCCT


Statistics
Matches: 91,  Mismatches: 13, Indels: 2
        0.86            0.12        0.02

Matches are distributed among these distances:
  65    1  0.01
  66   90  0.99

ACGTcount: A:0.23, C:0.30, G:0.17, T:0.30


Consensus pattern (65 bp):   
TCAATATTCCGTTAGCACCATAACGGTTACTCAGATCCGTCTTTTGCACCAACCGCACAGTCTTT
Done.