Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga11g00061.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2111
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Found at i:1584 original size:129 final size:129
Alignment explanation
Indices: 1321--1663 Score: 569
Period size: 129 Copynumber: 2.6 Consensus size: 129
1311 GTATGTCACT
* * * * * *
1321 TATTGTGCCTCAAATCGGACCAAAAAGCAATACTCCGAGTGCTTACTCGAACAAGATACCTACTA
1 TATTATGCCTAAAATCGGACCAAGAAGCAATAGTCCGAGCGCTTACTCGAACAAGATACCTGCTA
*
1386 GAACTACTACTACAACAAAGGAAAGATTACCCGGACACACTCGAACTCGGAGTATGGATTCTTAC
66 G-A--ACTACTACAACAAAGGAAAGATTACCAGGACACACTCGAACTCGGAGTATGGATTCTTAC
1451 CC
128 CC
*
1453 TATTATGCCTAAAATCAGACCAAGAAGCAATAGTCCGAGCGCTTACTCGAACAAGATACCTGCTA
1 TATTATGCCTAAAATCGGACCAAGAAGCAATAGTCCGAGCGCTTACTCGAACAAGATACCTGCTA
1518 GAACTACTACAACAAAGGAAAGATTACCAGGACACACTCGAACTCGGAGTATGGATTCTTACCC
66 GAACTACTACAACAAAGGAAAGATTACCAGGACACACTCGAACTCGGAGTATGGATTCTTACCC
* *
1582 TATTATGCCTAAAATCGGACCGAGAAGCAATAGTCCGAGCGCTTACTCGAACATGATACCTGCTA
1 TATTATGCCTAAAATCGGACCAAGAAGCAATAGTCCGAGCGCTTACTCGAACAAGATACCTGCTA
1647 GAACTACTACAACAAAG
66 GAACTACTACAACAAAG
1664 AAAAAATCGC
Statistics
Matches: 200, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
129 140 0.70
131 1 0.00
132 59 0.29
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.21
Consensus pattern (129 bp):
TATTATGCCTAAAATCGGACCAAGAAGCAATAGTCCGAGCGCTTACTCGAACAAGATACCTGCTA
GAACTACTACAACAAAGGAAAGATTACCAGGACACACTCGAACTCGGAGTATGGATTCTTACCC
Done.