Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga11g00061.F2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2148
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Found at i:1611 original size:129 final size:129
Alignment explanation
Indices: 1348--1690 Score: 569
Period size: 129 Copynumber: 2.6 Consensus size: 129
1338 GTATGTCACT
* * * * * *
1348 TATTGTGCCTCAAATCGGACCAAAAAGCAATACTCCGAGTGCTTACTCGAACAAGATACCTACTA
1 TATTATGCCTAAAATCGGACCAAGAAGCAATAGTCCGAGCGCTTACTCGAACAAGATACCTGCTA
*
1413 GAACTACTACTACAACAAAGGAAAGATTACCCGGACACACTCGAACTCGGAGTATGGATTCTTAC
66 G-A--ACTACTACAACAAAGGAAAGATTACCAGGACACACTCGAACTCGGAGTATGGATTCTTAC
1478 CC
128 CC
*
1480 TATTATGCCTAAAATCAGACCAAGAAGCAATAGTCCGAGCGCTTACTCGAACAAGATACCTGCTA
1 TATTATGCCTAAAATCGGACCAAGAAGCAATAGTCCGAGCGCTTACTCGAACAAGATACCTGCTA
1545 GAACTACTACAACAAAGGAAAGATTACCAGGACACACTCGAACTCGGAGTATGGATTCTTACCC
66 GAACTACTACAACAAAGGAAAGATTACCAGGACACACTCGAACTCGGAGTATGGATTCTTACCC
* *
1609 TATTATGCCTAAAATCGGACCGAGAAGCAATAGTCCGAGCGCTTACTCGAACATGATACCTGCTA
1 TATTATGCCTAAAATCGGACCAAGAAGCAATAGTCCGAGCGCTTACTCGAACAAGATACCTGCTA
1674 GAACTACTACAACAAAG
66 GAACTACTACAACAAAG
1691 AAAAAATCGC
Statistics
Matches: 200, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
129 140 0.70
131 1 0.00
132 59 0.29
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.21
Consensus pattern (129 bp):
TATTATGCCTAAAATCGGACCAAGAAGCAATAGTCCGAGCGCTTACTCGAACAAGATACCTGCTA
GAACTACTACAACAAAGGAAAGATTACCAGGACACACTCGAACTCGGAGTATGGATTCTTACCC
Done.