Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00066.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 962

Length: 1604
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:1490 original size:24 final size:24

Alignment explanation


    Indices: 1463--1516  Score: 63
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       1453 GGCCCCTCAT

                   *   *            
       1463 ATGTATATATATACATACATATAC
          1 ATGTATACATACACATACATATAC

                         *   *    * 
       1487 ATGTATACATACATATATATATGC
          1 ATGTATACATACACATACATATAC

                  
       1511 ATGTAT
          1 ATGTAT

       1517 GTTTCTCAAC


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39


Consensus pattern (24 bp):   
ATGTATACATACACATACATATAC
Done.