Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00075.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3994
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32


Found at i:988 original size:13 final size:13

Alignment explanation


    Indices: 970--1007  Score: 51
    Period size: 13  Copynumber: 2.9  Consensus size: 13

        960 TTGTGGGAAG

                          
        970 AAAATATAGAAAA-
          1 AAAATATA-AAAAT

                         
        983 AAAATATAAAAAT
          1 AAAATATAAAAAT

                *       
        996 AAAAGATAAAAA
          1 AAAATATAAAAA

       1008 GGAGATTAGA


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  12    4  0.17
  13   19  0.83

ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16


Consensus pattern (13 bp):   
AAAATATAAAAAT
Done.