Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00092.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1078
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27


Found at i:1039 original size:63 final size:62

Alignment explanation


    Indices: 940--1065  Score: 225
    Period size: 63  Copynumber: 2.0  Consensus size: 62

        930 CTTGCTGCTA

                         *                                                 
        940 TGTCTACAATAGTTTTGGCTTTAATGTGTTTGTCCTTAAGACTCTGGATTTCTATATGAAGTT
          1 TGTCTACAATAGTATTGGCTTTAATGTGTTTGTCCTT-AGACTCTGGATTTCTATATGAAGTT

                                                              *           
       1003 TGTCTACAATAGTATTGGCTTTAATGTGTTTGTCCTTAGACTCTGGATTTTTATATGAAGTT
          1 TGTCTACAATAGTATTGGCTTTAATGTGTTTGTCCTTAGACTCTGGATTTCTATATGAAGTT

             
       1065 T
          1 T

       1066 ATTTTTTGAG


Statistics
Matches: 61,  Mismatches: 2, Indels: 1
        0.95            0.03        0.02

Matches are distributed among these distances:
  62   25  0.41
  63   36  0.59

ACGTcount: A:0.22, C:0.12, G:0.19, T:0.47


Consensus pattern (62 bp):   
TGTCTACAATAGTATTGGCTTTAATGTGTTTGTCCTTAGACTCTGGATTTCTATATGAAGTT
Done.