Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00099.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4728
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:4637 original size:33 final size:33

Alignment explanation


    Indices: 4600--4664  Score: 112
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       4590 AGCTCACGCT

                                 *           
       4600 TGCACTCGGCATCAAGGAGTTTTCACCTATGCC
          1 TGCACTCGGCATCAAGGAGTTCTCACCTATGCC

                     *                      
       4633 TGCACTCGGTATCAAGGAGTTCTCACCTATGC
          1 TGCACTCGGCATCAAGGAGTTCTCACCTATGC

       4665 AAAAATTTGT


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  33   30  1.00

ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28


Consensus pattern (33 bp):   
TGCACTCGGCATCAAGGAGTTCTCACCTATGCC
Done.