Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00104.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2106
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28


Found at i:142 original size:63 final size:63

Alignment explanation


    Indices: 42--161  Score: 186
    Period size: 63  Copynumber: 1.9  Consensus size: 63

         32 ATAGATCTGC

                                 *          *                              
         42 GCAAGATGAGCAACGGTGACAGTCATTGGAATGACGAAGATTGGAGACTCAATATCGATCAGT
          1 GCAAGATGAGCAACGGTGACACTCATTGGAATCACGAAGATTGGAGACTCAATATCGATCAGT

                             *     **                     *          
        105 GCAAGATGAGCAACGGTTACACTTTTTGGAATCACGAAGATTGGAGTCTCAATATCG
          1 GCAAGATGAGCAACGGTGACACTCATTGGAATCACGAAGATTGGAGACTCAATATCG

        162 CTGATCCGAT


Statistics
Matches: 51,  Mismatches: 6, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  63   51  1.00

ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23


Consensus pattern (63 bp):   
GCAAGATGAGCAACGGTGACACTCATTGGAATCACGAAGATTGGAGACTCAATATCGATCAGT
Done.