Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00109.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 919

Length: 1533
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:1372 original size:3 final size:3

Alignment explanation


    Indices: 1366--1404  Score: 69
    Period size: 3  Copynumber: 13.0  Consensus size: 3

       1356 TGTTGGCGTT

                                                         *     
       1366 GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GTC GGC
          1 GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC

       1405 TAGCTGCAAT


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.00, C:0.33, G:0.64, T:0.03


Consensus pattern (3 bp):   
GGC

Done.