Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00113.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3668
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32


Found at i:3012 original size:5 final size:5

Alignment explanation


    Indices: 2992--3034  Score: 52
    Period size: 5  Copynumber: 8.6  Consensus size: 5

       2982 TTATGTGTTC

                                      *           *             
       2992 TTTAT TTT-T ATTTAT TTTAT TCTAT TTTAT TCTAT TTTAT TTT
          1 TTTAT TTTAT -TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT

       3035 TCACACGAAC


Statistics
Matches: 32,  Mismatches: 4, Indels: 4
        0.80            0.10        0.10

Matches are distributed among these distances:
   4    1  0.03
   5   30  0.94
   6    1  0.03

ACGTcount: A:0.19, C:0.05, G:0.00, T:0.77


Consensus pattern (5 bp):   
TTTAT

Done.