Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00116.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2182
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.38


Found at i:179 original size:17 final size:17

Alignment explanation


    Indices: 148--181  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        138 GCGTCAGGTA

                      *      
        148 TTTTGATTAATTTTCAG
          1 TTTTGATTAAGTTTCAG

                    *        
        165 TTTTGATTTAGTTTCAG
          1 TTTTGATTAAGTTTCAG

        182 CTAAAACCCA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.21, C:0.06, G:0.15, T:0.59


Consensus pattern (17 bp):   
TTTTGATTAAGTTTCAG
Done.