Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00118.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 847

Length: 1413
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:1317 original size:32 final size:32

Alignment explanation


    Indices: 1279--1343  Score: 130
    Period size: 32  Copynumber: 2.0  Consensus size: 32

       1269 TAATGTCTCA

                                            
       1279 TTTTGCGTCAAGTATGTTTATGGTTTTTAATG
          1 TTTTGCGTCAAGTATGTTTATGGTTTTTAATG

                                            
       1311 TTTTGCGTCAAGTATGTTTATGGTTTTTAATG
          1 TTTTGCGTCAAGTATGTTTATGGTTTTTAATG

             
       1343 T
          1 T

       1344 CTAAAATCGT


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   33  1.00

ACGTcount: A:0.18, C:0.06, G:0.22, T:0.54


Consensus pattern (32 bp):   
TTTTGCGTCAAGTATGTTTATGGTTTTTAATG
Done.