Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00122.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 983

Length: 1639
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29


Found at i:340 original size:84 final size:84

Alignment explanation


    Indices: 217--376  Score: 266
    Period size: 84  Copynumber: 1.9  Consensus size: 84

        207 ACTAGCGCGG

                     *            *                                      *   
        217 ACGGACTGCTGTTGTCCAGCCTGGAATCTACAAGAAACCTTCGACAGCCTGGGAGGGCGACGCCT
          1 ACGGACTGCCGTTGTCCAGCCTCGAATCTACAAGAAACCTTCGACAGCCTGGGAGGGCGACACCT

            *                  
        282 GAAGTACAAGATGGGACGA
         66 CAAGTACAAGATGGGACGA

                                            *               *                
        301 ACGGACTGCCGTTGTCCAGCCTCGAATCTACAGGAAACCTTCGACAGCTTGGGAGGGCGACACCT
          1 ACGGACTGCCGTTGTCCAGCCTCGAATCTACAAGAAACCTTCGACAGCCTGGGAGGGCGACACCT

                       
        366 CAAGTACAAGA
         66 CAAGTACAAGA

        377 CGGCGCCAAG


Statistics
Matches: 70,  Mismatches: 6, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  84   70  1.00

ACGTcount: A:0.28, C:0.27, G:0.29, T:0.17


Consensus pattern (84 bp):   
ACGGACTGCCGTTGTCCAGCCTCGAATCTACAAGAAACCTTCGACAGCCTGGGAGGGCGACACCT
CAAGTACAAGATGGGACGA

Done.