Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga11g00122.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2109
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Found at i:340 original size:84 final size:84
Alignment explanation
Indices: 217--376 Score: 266
Period size: 84 Copynumber: 1.9 Consensus size: 84
207 ACTAGCGCGG
* * *
217 ACGGACTGCTGTTGTCCAGCCTGGAATCTACAAGAAACCTTCGACAGCCTGGGAGGGCGACGCCT
1 ACGGACTGCCGTTGTCCAGCCTCGAATCTACAAGAAACCTTCGACAGCCTGGGAGGGCGACACCT
*
282 GAAGTACAAGATGGGACGA
66 CAAGTACAAGATGGGACGA
* *
301 ACGGACTGCCGTTGTCCAGCCTCGAATCTACAGGAAACCTTCGACAGCTTGGGAGGGCGACACCT
1 ACGGACTGCCGTTGTCCAGCCTCGAATCTACAAGAAACCTTCGACAGCCTGGGAGGGCGACACCT
366 CAAGTACAAGA
66 CAAGTACAAGA
377 CGGCGCCAAG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
84 70 1.00
ACGTcount: A:0.28, C:0.27, G:0.29, T:0.17
Consensus pattern (84 bp):
ACGGACTGCCGTTGTCCAGCCTCGAATCTACAAGAAACCTTCGACAGCCTGGGAGGGCGACACCT
CAAGTACAAGATGGGACGA
Found at i:759 original size:99 final size:99
Alignment explanation
Indices: 588--786 Score: 380
Period size: 99 Copynumber: 2.0 Consensus size: 99
578 AACTATAAAG
588 GAAGGTGCGAAAGTTTTAGTGGATCGGATAGACCGAAGACTAAATAAAGTAAGTCTCTTAATTTA
1 GAAGGTGCGAAAGTTTTAGTGGATCGGATAGACCGAAGACTAAATAAAGTAAGTCTCTTAATTTA
* *
653 ATGTAGTAATTCATATTCAATTCAAATTATTGTT
66 ACGTAGTAATTCATATTCAATTCAAACTATTGTT
687 GAAGGTGCGAAAGTTTTAGTGGATCGGATAGACCGAAGACTAAATAAAGTAAGTCTCTTAATTTA
1 GAAGGTGCGAAAGTTTTAGTGGATCGGATAGACCGAAGACTAAATAAAGTAAGTCTCTTAATTTA
752 ACGTAGTAATTCATATTCAATTCAAACTATTGTT
66 ACGTAGTAATTCATATTCAATTCAAACTATTGTT
786 G
1 G
787 TGCTTTATAC
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
99 98 1.00
ACGTcount: A:0.36, C:0.11, G:0.20, T:0.33
Consensus pattern (99 bp):
GAAGGTGCGAAAGTTTTAGTGGATCGGATAGACCGAAGACTAAATAAAGTAAGTCTCTTAATTTA
ACGTAGTAATTCATATTCAATTCAAACTATTGTT
Done.