Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00124.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4464
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.32


Found at i:2170 original size:22 final size:22

Alignment explanation


    Indices: 2143--2186  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       2133 AACATATATA

                                  
       2143 ATATTGGTTATTAGATTTTGTT
          1 ATATTGGTTATTAGATTTTGTT

                                  
       2165 ATATTGGTTATTAGATTTTGTT
          1 ATATTGGTTATTAGATTTTGTT

       2187 TTCGTGTAAC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.23, C:0.00, G:0.18, T:0.59


Consensus pattern (22 bp):   
ATATTGGTTATTAGATTTTGTT
Done.