Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00130.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2163
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27


Found at i:493 original size:21 final size:22

Alignment explanation


    Indices: 463--519  Score: 82
    Period size: 21  Copynumber: 2.7  Consensus size: 22

        453 AATGCAAACA

                 *                
        463 ACAACTATCAGAGGTACG-CGG
          1 ACAACAATCAGAGGTACGCCGG

                       *          
        484 ACAACAATCAGGGGTACGCCGG
          1 ACAACAATCAGAGGTACGCCGG

                           
        506 -CAACAATCAGAGGT
          1 ACAACAATCAGAGGT

        520 CCATGAAAAA


Statistics
Matches: 32,  Mismatches: 3, Indels: 2
        0.86            0.08        0.05

Matches are distributed among these distances:
  21   29  0.91
  22    3  0.09

ACGTcount: A:0.35, C:0.25, G:0.28, T:0.12


Consensus pattern (22 bp):   
ACAACAATCAGAGGTACGCCGG

Done.