Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00132.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 761

Length: 1269
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.39


Found at i:734 original size:12 final size:12

Alignment explanation


    Indices: 719--744  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        709 TTTATGTGGT

                        
        719 TTTTTATTTTTG
          1 TTTTTATTTTTG

                        
        731 TTTTTATTTTTG
          1 TTTTTATTTTTG

              
        743 TT
          1 TT

        745 ATTTCATGGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.08, C:0.00, G:0.08, T:0.85


Consensus pattern (12 bp):   
TTTTTATTTTTG

Found at i:1170 original size:31 final size:30

Alignment explanation


    Indices: 1128--1200  Score: 85
    Period size: 31  Copynumber: 2.4  Consensus size: 30

       1118 GTTATGTAAA

                          *         *     *
       1128 AATTTTAATTTT-TTTTTCTTTAATTTGATT
          1 AATTTTAATTTTGTATTT-TTTAAATTGATG

             *                             
       1158 AGTTTTAAATTTTGTATTTTTTAAATTGATG
          1 AATTTT-AATTTTGTATTTTTTAAATTGATG

                        
       1189 AATTTTAATTTT
          1 AATTTTAATTTT

       1201 AATAATTTTT


Statistics
Matches: 36,  Mismatches: 5, Indels: 4
        0.80            0.11        0.09

Matches are distributed among these distances:
  30   11  0.31
  31   21  0.58
  32    4  0.11

ACGTcount: A:0.27, C:0.01, G:0.07, T:0.64


Consensus pattern (30 bp):   
AATTTTAATTTTGTATTTTTTAAATTGATG
Done.