Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00152.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4787
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:4275 original size:56 final size:55

Alignment explanation


    Indices: 4177--4285  Score: 157
    Period size: 58  Copynumber: 1.9  Consensus size: 55

       4167 TTTCTTATTA

                            *                                         
       4177 CATAATACGTCCCAACTCAGAAAAAAAACACATTTATGTTTTTTTTAGTGTTCCATTG
          1 CATAATACGTCCCAACGCAG-AAAAAAACACATTTATG--TTTTTTAGTGTTCCATTG

                  *              *                              
       4235 CATAATCCGTCCCAACGCAG-GAAAAACACATTTATGTTTTTTAGTGTTCCA
          1 CATAATACGTCCCAACGCAGAAAAAAACACATTTATGTTTTTTAGTGTTCCA

       4286 AACAATATTC


Statistics
Matches: 48,  Mismatches: 3, Indels: 4
        0.87            0.05        0.07

Matches are distributed among these distances:
  54   15  0.31
  56   15  0.31
  58   18  0.38

ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34


Consensus pattern (55 bp):   
CATAATACGTCCCAACGCAGAAAAAAACACATTTATGTTTTTTAGTGTTCCATTG
Done.