Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00154.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2745
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33


Found at i:1877 original size:107 final size:107

Alignment explanation


    Indices: 1740--1952  Score: 399
    Period size: 107  Copynumber: 2.0  Consensus size: 107

       1730 AATAAAAAAG

                                                                             
       1740 ATAGAAAATTTGAATAGCAGGTGTCGAAACCATTTTCATATCAAGTTTTAGAAAATGGGAATCGA
          1 ATAGAAAATTTGAATAGCAGGTGTCGAAACCATTTTCATATCAAGTTTTAGAAAATGGGAATCGA

                                       *              
       1805 TTTTAAAAAACGAAAACGGGAGTCGTCGCCAATCTTTTTAGT
         66 TTTTAAAAAACGAAAACGGGAGTCGTCACCAATCTTTTTAGT

                                                      *      *               
       1847 ATAGAAAATTTGAATAGCAGGTGTCGAAACCATTTTCATATCGAGTTTTGGAAAATGGGAATCGA
          1 ATAGAAAATTTGAATAGCAGGTGTCGAAACCATTTTCATATCAAGTTTTAGAAAATGGGAATCGA

                                                     
       1912 TTTTAAAAAACGAAAACGGGAGTCGTCACCAATCTTTTTAG
         66 TTTTAAAAAACGAAAACGGGAGTCGTCACCAATCTTTTTAG

       1953 GTGTGATTGG


Statistics
Matches: 103,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 107  103  1.00

ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30


Consensus pattern (107 bp):   
ATAGAAAATTTGAATAGCAGGTGTCGAAACCATTTTCATATCAAGTTTTAGAAAATGGGAATCGA
TTTTAAAAAACGAAAACGGGAGTCGTCACCAATCTTTTTAGT
Done.