Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00157.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2737
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31


Found at i:1109 original size:36 final size:36

Alignment explanation


    Indices: 1062--1132  Score: 142
    Period size: 36  Copynumber: 2.0  Consensus size: 36

       1052 ATAATAAGAG

                                                
       1062 TATGAGTAGCAGCACTTGTCTTCTTGAGCGCTTAGT
          1 TATGAGTAGCAGCACTTGTCTTCTTGAGCGCTTAGT

                                               
       1098 TATGAGTAGCAGCACTTGTCTTCTTGAGCGCTTAG
          1 TATGAGTAGCAGCACTTGTCTTCTTGAGCGCTTAG

       1133 AAATAAGGGA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   35  1.00

ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35


Consensus pattern (36 bp):   
TATGAGTAGCAGCACTTGTCTTCTTGAGCGCTTAGT
Done.