Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00165.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4881
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:2340 original size:3 final size:3

Alignment explanation


    Indices: 2332--2374  Score: 59
    Period size: 3  Copynumber: 14.3  Consensus size: 3

       2322 GTATGGAATT

                              *             * *                      
       2332 ATG ATG ATG ATG ATA ATG ATG ATG GTA ATG ATG ATG ATG ATG A
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A

       2375 CGACAAGTCA


Statistics
Matches: 34,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   3   34  1.00

ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33


Consensus pattern (3 bp):   
ATG

Done.