Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00167.F12

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4278
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31


Found at i:1951 original size:3 final size:3

Alignment explanation


    Indices: 1943--2012  Score: 104
    Period size: 3  Copynumber: 23.3  Consensus size: 3

       1933 TTAGTATGGA

                                      *                           *        
       1943 ATG ATG ATG ATG ATG ATG ATA ATG ATG ATG ATG ATG ATG ATA ATG ATG
          1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG

                * *                      
       1991 ATG GTA ATG ATG ATG ATG ATG A
          1 ATG ATG ATG ATG ATG ATG ATG A

       2013 CGACGACAAG


Statistics
Matches: 59,  Mismatches: 8, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   3   59  1.00

ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33


Consensus pattern (3 bp):   
ATG

Found at i:1968 original size:21 final size:21

Alignment explanation


    Indices: 1942--2012  Score: 115
    Period size: 21  Copynumber: 3.4  Consensus size: 21

       1932 TTTAGTATGG

                                 
       1942 AATGATGATGATGATGATGAT
          1 AATGATGATGATGATGATGAT

                                 
       1963 AATGATGATGATGATGATGAT
          1 AATGATGATGATGATGATGAT

                      * *        
       1984 AATGATGATGGTAATGATGAT
          1 AATGATGATGATGATGATGAT

            *       
       2005 GATGATGA
          1 AATGATGA

       2013 CGACGACAAG


Statistics
Matches: 47,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  21   47  1.00

ACGTcount: A:0.38, C:0.00, G:0.30, T:0.32


Consensus pattern (21 bp):   
AATGATGATGATGATGATGAT
Done.