Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00097.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 296

Length: 494
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32


Found at i:456 original size:15 final size:15

Alignment explanation


    Indices: 436--465  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        426 ATAGATTTGG

                  *        
        436 AATTTTTTGTATTTT
          1 AATTTTCTGTATTTT

                           
        451 AATTTTCTGTATTTT
          1 AATTTTCTGTATTTT

        466 TTGAAAATTT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.20, C:0.03, G:0.07, T:0.70


Consensus pattern (15 bp):   
AATTTTCTGTATTTT
Done.