Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga11g00173.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1746
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Found at i:519 original size:144 final size:144
Alignment explanation
Indices: 284--566 Score: 433
Period size: 144 Copynumber: 2.0 Consensus size: 144
274 CTAATGTTTC
* * ** *
284 CAATTGAACAAGATGTTGAAGCCCAATGGGGAGAGACACCAGCTTTGGAATATTCTTAATCTCCA
1 CAATTGAACAAGATGTTGAAGCCAAAAGGGGAGAGACACCAGCTGCGGAATATTATTAATCTCCA
* ** *
349 AACGAGAGAGATTCTTAAGGGCTTCCCATTGCATGCCTTCTAAATCAACCTCCTTGCAATCTCCT
66 AACGAGAGAGATTCGTAAGGGCTTCCCATTGCATGCCCACGAAATCAACCTCCTTGCAATCTCCT
414 ACTGTTAATCCTTT
131 ACTGTTAATCCTTT
* *
428 CAATTGAACAAGATGTTGAAGCCAAAAGGGGAGAGACAGCAGCTGCGGATTATTATTAATCTCCA
1 CAATTGAACAAGATGTTGAAGCCAAAAGGGGAGAGACACCAGCTGCGGAATATTATTAATCTCCA
*
493 AATGAGAGAGATTCGTAAGGAG-TTCCCATTGCATGCCCACGAAATCAACCTCCTTGCAATCTCC
66 AACGAGAGAGATTCGTAAGG-GCTTCCCATTGCATGCCCACGAAATCAACCTCCTTGCAATCTCC
*
557 TATTGTTAAT
130 TACTGTTAAT
567 TTTTTGAGGC
Statistics
Matches: 125, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
144 124 0.99
145 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (144 bp):
CAATTGAACAAGATGTTGAAGCCAAAAGGGGAGAGACACCAGCTGCGGAATATTATTAATCTCCA
AACGAGAGAGATTCGTAAGGGCTTCCCATTGCATGCCCACGAAATCAACCTCCTTGCAATCTCCT
ACTGTTAATCCTTT
Done.