Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00175.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4657
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31


Found at i:1570 original size:12 final size:12

Alignment explanation


    Indices: 1553--1577  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1543 TAACGTGTAA

                        
       1553 AATGCATGATTT
          1 AATGCATGATTT

                        
       1565 AATGCATGATTT
          1 AATGCATGATTT

             
       1577 A
          1 A

       1578 GCTGAATTTG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40


Consensus pattern (12 bp):   
AATGCATGATTT
Done.