Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00179.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3581
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30


Found at i:1582 original size:51 final size:51

Alignment explanation


    Indices: 1500--1601  Score: 152
    Period size: 51  Copynumber: 2.0  Consensus size: 51

       1490 GTAGGAAAAA

                             *   *    *           *            
       1500 GATATCCGAGGGAAGGATTAAGATGTGAAATGCATGATTTAATGCATGATC
          1 GATATCCGAGGGAAGGACTAACATGTAAAATGCATGATCTAATGCATGATC

                                                                
       1551 GATATCC-AGGGGAAGGACTAACATGTAAAATGCATGATCTAATGCATGATC
          1 GATATCCGA-GGGAAGGACTAACATGTAAAATGCATGATCTAATGCATGATC

       1602 TAGCTGAATC


Statistics
Matches: 46,  Mismatches: 4, Indels: 2
        0.88            0.08        0.04

Matches are distributed among these distances:
  50    1  0.02
  51   45  0.98

ACGTcount: A:0.36, C:0.13, G:0.25, T:0.25


Consensus pattern (51 bp):   
GATATCCGAGGGAAGGACTAACATGTAAAATGCATGATCTAATGCATGATC

Found at i:1596 original size:12 final size:12

Alignment explanation


    Indices: 1579--1603  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

       1569 TAACATGTAA

                        
       1579 AATGCATGATCT
          1 AATGCATGATCT

                        
       1591 AATGCATGATCT
          1 AATGCATGATCT

             
       1603 A
          1 A

       1604 GCTGAATCAG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Consensus pattern (12 bp):   
AATGCATGATCT
Done.