Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00098.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3318
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34


Found at i:44 original size:6 final size:6

Alignment explanation


    Indices: 35--77  Score: 59
    Period size: 6  Copynumber: 7.2  Consensus size: 6

         25 AACTCATTCT

                                   *      * *                 
         35 CACCGC CACCGC CACCGC CATCGC CATCTC CACCGC CACCGC C
          1 CACCGC CACCGC CACCGC CACCGC CACCGC CACCGC CACCGC C

         78 TCTAGGGTTT


Statistics
Matches: 33,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   6   33  1.00

ACGTcount: A:0.16, C:0.63, G:0.14, T:0.07


Consensus pattern (6 bp):   
CACCGC

Found at i:2253 original size:21 final size:21

Alignment explanation


    Indices: 2224--2269  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       2214 TTAGTTTTTT

                *      *         
       2224 TTATTGTATATTATATTATGA
          1 TTATAGTATATAATATTATGA

                          *     *
       2245 TTATAGTATATAATTTTATGG
          1 TTATAGTATATAATATTATGA

                
       2266 TTAT
          1 TTAT

       2270 CGATTTTTTT


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.33, C:0.00, G:0.11, T:0.57


Consensus pattern (21 bp):   
TTATAGTATATAATATTATGA
Done.