Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00184.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3666
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35


Found at i:301 original size:28 final size:28

Alignment explanation


    Indices: 261--316  Score: 112
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        251 TAGTATATTA

                                        
        261 TTTCAATTTTGATGAGAATTGTACTCTC
          1 TTTCAATTTTGATGAGAATTGTACTCTC

                                        
        289 TTTCAATTTTGATGAGAATTGTACTCTC
          1 TTTCAATTTTGATGAGAATTGTACTCTC

        317 GCTTAACGCT


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.25, C:0.14, G:0.14, T:0.46


Consensus pattern (28 bp):   
TTTCAATTTTGATGAGAATTGTACTCTC
Done.