Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00186.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6212
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:713 original size:13 final size:13

Alignment explanation


    Indices: 695--721  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

        685 GTGAATGATT

                         
        695 TATTTTTTATTAA
          1 TATTTTTTATTAA

                         
        708 TATTTTTTATTAA
          1 TATTTTTTATTAA

             
        721 T
          1 T

        722 GGTGGTAAGG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70


Consensus pattern (13 bp):   
TATTTTTTATTAA
Done.