Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00214.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2372
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.39


Found at i:1932 original size:18 final size:17

Alignment explanation


    Indices: 1899--1932  Score: 50
    Period size: 17  Copynumber: 1.9  Consensus size: 17

       1889 GAGCTCAATA

                       *     
       1899 TTTTTCAAAATTTAGTC
          1 TTTTTCAAAATATAGTC

                             
       1916 TTTTTCAAATATATAGT
          1 TTTTTCAAA-ATATAGT

       1933 AAAGTAAAAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    9  0.60
  18    6  0.40

ACGTcount: A:0.32, C:0.09, G:0.06, T:0.53


Consensus pattern (17 bp):   
TTTTTCAAAATATAGTC
Done.