Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00216.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5010
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:360 original size:10 final size:10

Alignment explanation


    Indices: 345--374  Score: 51
    Period size: 10  Copynumber: 2.9  Consensus size: 10

        335 TATGGAATGA

                      
        345 AAAAAAAAAG
          1 AAAAAAAAAG

                      
        355 AAAAAAAAAG
          1 AAAAAAAAAG

                      
        365 AAGAAAAAAA
          1 AA-AAAAAAA

        375 AAAGCGTTGG


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  10   12  0.63
  11    7  0.37

ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00


Consensus pattern (10 bp):   
AAAAAAAAAG

Found at i:362 original size:13 final size:13

Alignment explanation


    Indices: 344--377  Score: 59
    Period size: 13  Copynumber: 2.6  Consensus size: 13

        334 TTATGGAATG

                         
        344 AAAAAAAAAAGAA
          1 AAAAAAAAAAGAA

                   *     
        357 AAAAAAAGAAGAA
          1 AAAAAAAAAAGAA

                    
        370 AAAAAAAA
          1 AAAAAAAA

        378 GCGTTGGGTG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  13   19  1.00

ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00


Consensus pattern (13 bp):   
AAAAAAAAAAGAA
Done.