Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00236.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 397

Length: 663
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29


Found at i:219 original size:29 final size:29

Alignment explanation


    Indices: 177--234  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        167 AAAAAAAAAG

                                         
        177 AAAGGAAAAGGGTTTCGGCTTAGGGCGTC
          1 AAAGGAAAAGGGTTTCGGCTTAGGGCGTC

                                         
        206 AAAGGAAAAGGGTTTCGGCTTAGGGCGTC
          1 AAAGGAAAAGGGTTTCGGCTTAGGGCGTC

        235 CCTTTTGCGC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.28, C:0.14, G:0.38, T:0.21


Consensus pattern (29 bp):   
AAAGGAAAAGGGTTTCGGCTTAGGGCGTC
Done.