Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00237.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 802

Length: 1337
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25


Found at i:18 original size:7 final size:7

Alignment explanation


    Indices: 7--32  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

          1 AGAAAT

                   
          7 AAAAAGA
          1 AAAAAGA

                   
         14 AAAAAGA
          1 AAAAAGA

                   
         21 AAAAAGA
          1 AAAAAGA

                 
         28 AAAAA
          1 AAAAA

         33 AAGAAGCAAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00


Consensus pattern (7 bp):   
AAAAAGA
Done.