Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00244.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 375

Length: 626
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30


Found at i:205 original size:116 final size:116

Alignment explanation


    Indices: 1--233  Score: 466
    Period size: 116  Copynumber: 2.0  Consensus size: 116

                                                                             
          1 AGACCATCAATAACAAAGCAAATAATAACAATCACCGGCGGATCCCCATTCGCCAGCAATTAAAC
          1 AGACCATCAATAACAAAGCAAATAATAACAATCACCGGCGGATCCCCATTCGCCAGCAATTAAAC

                                                               
         66 GCAGGTCTCATTCATTTCCGGTGCGTTTAATAATCCCTTTATACGCCATGG
         66 GCAGGTCTCATTCATTTCCGGTGCGTTTAATAATCCCTTTATACGCCATGG

                                                                             
        117 AGACCATCAATAACAAAGCAAATAATAACAATCACCGGCGGATCCCCATTCGCCAGCAATTAAAC
          1 AGACCATCAATAACAAAGCAAATAATAACAATCACCGGCGGATCCCCATTCGCCAGCAATTAAAC

                                                               
        182 GCAGGTCTCATTCATTTCCGGTGCGTTTAATAATCCCTTTATACGCCATGG
         66 GCAGGTCTCATTCATTTCCGGTGCGTTTAATAATCCCTTTATACGCCATGG

             
        233 A
          1 A

        234 CATGAAGAAG


Statistics
Matches: 117,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
 116  117  1.00

ACGTcount: A:0.33, C:0.27, G:0.15, T:0.24


Consensus pattern (116 bp):   
AGACCATCAATAACAAAGCAAATAATAACAATCACCGGCGGATCCCCATTCGCCAGCAATTAAAC
GCAGGTCTCATTCATTTCCGGTGCGTTTAATAATCCCTTTATACGCCATGG
Done.