Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00262.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2944
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32


Found at i:509 original size:19 final size:20

Alignment explanation


    Indices: 476--513  Score: 60
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        466 TTTATATATG

                    *           
        476 TAAAAATATTATTTAAAAAT
          1 TAAAAATAATATTTAAAAAT

                               
        496 TAAAAATAAT-TTTAAAAA
          1 TAAAAATAATATTTAAAAA

        514 ATCTTTTTAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  19    8  0.47
  20    9  0.53

ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37


Consensus pattern (20 bp):   
TAAAAATAATATTTAAAAAT

Done.