Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00279.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 604

Length: 1008
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26


Found at i:957 original size:42 final size:42

Alignment explanation


    Indices: 894--1006  Score: 149
    Period size: 42  Copynumber: 2.7  Consensus size: 42

        884 CTACTACGAG

                                             *      *  
        894 TAAGACTCCTTTTCGAA-AAAGAAAAACCACGGTGGTGGTGTT
          1 TAAGACTCCTTTTC-AATAAAGAAAAACCACGGCGGTGGTATT

                                       * *            
        936 TAAGACTCCTTTTCAATAAAGAAAAACTATGGCGGTGGTATT
          1 TAAGACTCCTTTTCAATAAAGAAAAACCACGGCGGTGGTATT

                                 *        
        978 TAAGACTTCC-TTTCAATAAAAAAAAACCA
          1 TAAGAC-TCCTTTTCAATAAAGAAAAACCA

       1007 TG


Statistics
Matches: 63,  Mismatches: 6, Indels: 4
        0.86            0.08        0.05

Matches are distributed among these distances:
  41    2  0.03
  42   58  0.92
  43    3  0.05

ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27


Consensus pattern (42 bp):   
TAAGACTCCTTTTCAATAAAGAAAAACCACGGCGGTGGTATT
Done.