Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00286.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5474
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:5281 original size:10 final size:10

Alignment explanation


    Indices: 5266--5293  Score: 56
    Period size: 10  Copynumber: 2.8  Consensus size: 10

       5256 TTTAATTTAC

                      
       5266 ATTTGATGTA
          1 ATTTGATGTA

                      
       5276 ATTTGATGTA
          1 ATTTGATGTA

                    
       5286 ATTTGATG
          1 ATTTGATG

       5294 CTGTAGGAGC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   18  1.00

ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50


Consensus pattern (10 bp):   
ATTTGATGTA
Done.