Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00298.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 969

Length: 1615
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31


Found at i:42 original size:2 final size:2

Alignment explanation


    Indices: 35--65  Score: 53
    Period size: 2  Copynumber: 15.5  Consensus size: 2

         25 CCAACAGTGT

                                              *           
         35 TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

         66 AAGCCTTCAC


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55


Consensus pattern (2 bp):   
TC

Done.