Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00301.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 427

Length: 713
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36


Found at i:689 original size:7 final size:6

Alignment explanation


    Indices: 654--697  Score: 52
    Period size: 6  Copynumber: 6.8  Consensus size: 6

        644 TTCAATCTTT

                                       *                      
        654 ATTTTA ATTTTA ATTTTA ATTTTGT ATTTTAA ATTTTAA ATTTT
          1 ATTTTA ATTTTA ATTTTA ATTTT-A ATTTT-A ATTTT-A ATTTT

        698 TTAGTTGTAT


Statistics
Matches: 34,  Mismatches: 3, Indels: 1
        0.89            0.08        0.03

Matches are distributed among these distances:
   6   17  0.50
   7   17  0.50

ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66


Consensus pattern (6 bp):   
ATTTTA
Done.