Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00310.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 955

Length: 1593
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32


Found at i:102 original size:11 final size:11

Alignment explanation


    Indices: 70--102  Score: 50
    Period size: 11  Copynumber: 3.1  Consensus size: 11

         60 TTCTCTGATC

                       
         70 TTCTTTATTTT
          1 TTCTTTATTTT

            *          
         81 CTCTTTATTTT
          1 TTCTTTATTTT

                       
         92 TTCTTT-TTTT
          1 TTCTTTATTTT

             
        102 T
          1 T

        103 GCCTTTTAAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  10    5  0.25
  11   15  0.75

ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82


Consensus pattern (11 bp):   
TTCTTTATTTT
Done.