Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00313.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4020
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27


Found at i:3476 original size:123 final size:123

Alignment explanation


    Indices: 3249--3491  Score: 382
    Period size: 123  Copynumber: 2.0  Consensus size: 123

       3239 AGCTCCAGAT

                                                    *             *          
       3249 TCTTCAAAATCAACTTCTGGACATTTCAACAGAAAGGGATGAACTAAAGACACATATCGAGGAAC
          1 TCTTCAAAATCAACTTCTGGACATTTCAACAGAAAGGGATAAACTAAAGACACAAATCGAGGAAC

                                                                      
       3314 TGACCAGCAAATTATCCTGCCTCGGAAAGGAAAATCTTAAAAACGATTCTAATGAGAA
         66 TGACCAGCAAATTATCCTGCCTCGGAAAGGAAAATCTTAAAAACGATTCTAATGAGAA

                                *                                            
       3372 TCTT-AAAGATCAACTTCTGTACATTTCAACAGAAAGGGATAAACTAAAGACACAAATCGAGGAA
          1 TCTTCAAA-ATCAACTTCTGGACATTTCAACAGAAAGGGATAAACTAAAGACACAAATCGAGGAA

                 *    *          *       *               *           
       3436 CTGACTAGCAGATTATCCTGCGTC-GAAGCGGAAAATCTTAAAAATGATTCTAATGA
         65 CTGACCAGCAAATTATCCTGCCTCGGAA-AGGAAAATCTTAAAAACGATTCTAATGA

       3492 CATGTTAGTG


Statistics
Matches: 110,  Mismatches: 8, Indels: 4
        0.90            0.07        0.03

Matches are distributed among these distances:
 122    6  0.05
 123  104  0.95

ACGTcount: A:0.41, C:0.19, G:0.17, T:0.23


Consensus pattern (123 bp):   
TCTTCAAAATCAACTTCTGGACATTTCAACAGAAAGGGATAAACTAAAGACACAAATCGAGGAAC
TGACCAGCAAATTATCCTGCCTCGGAAAGGAAAATCTTAAAAACGATTCTAATGAGAA
Done.