Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00319.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 852

Length: 1420
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29


Found at i:35 original size:11 final size:10

Alignment explanation


    Indices: 15--39  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

          5 CAAAAATTTG

                      
         15 AAAGAAAAAA
          1 AAAGAAAAAA

                      
         25 AAAGAAAAAA
          1 AAAGAAAAAA

                 
         35 AAAGA
          1 AAAGA

         40 GCTAATCAGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00


Consensus pattern (10 bp):   
AAAGAAAAAA
Done.