Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00328.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 953

Length: 1589
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:1558 original size:19 final size:19

Alignment explanation


    Indices: 1531--1567  Score: 65
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       1521 AGACTGTAAC

                               
       1531 AATGATGTTTGAAAACTTT
          1 AATGATGTTTGAAAACTTT

                *             
       1550 AATGTTGTTTGAAAACTT
          1 AATGATGTTTGAAAACTT

       1568 AGTTATATAC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.35, C:0.05, G:0.16, T:0.43


Consensus pattern (19 bp):   
AATGATGTTTGAAAACTTT
Done.